Publications

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2009
Characterization of leaf apoplastic peroxidases and metabolites in Vigna unguiculata in response to toxic manganese supply and silicon, Führs, H.; Götze, S.; Specht, A.; Erban, A.; Gallien, S.; Heintz, D.; Van Dorsselaer, A.; Kopka, J.; Braun, H.P.; Horst, W.J. , Journal of Experimental Botany, Volume 60(6), p.1663-1678, (2009)
Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants, Hernandez, G.; Valdes-Lopez, O.; Ramirez, M.; Goffard, N.; Weiller, G.; Aparicio-Fabre, R.; Fuentes, S. I; Erban, A.; Kopka, J.; Udvardi, M.K.; Vance, C.P. , Plant Physiology, Volume 151(3), p.1221-1238, (2009)
Inter-laboratory reproducibility of fast gas chromatography–electron impact–time of flight mass spectrometry (GC–EI–TOF/MS) based plant metabolomics, Allwood, J.W.; Erban, A.; de Koning, S.; Dunn, W.B.; Luedemann, A.; Lommen, A.; Kay, L.; Löscher, R.; Kopka, J.; Goodacre, R. , Metabolomics, Volume 5(4), p.479-496, (2009)
Metabolic profiling of Conference pears under low oxygen stress, Pedreschi, R.; Franck, C.; Lammertyn, J.; Erban, A.; Kopka, J.; Hertog, M.; Verlinden, B.; Nicolai, B. , Postharvest Biology and Technology, Volume 51(2), p.123-130, (2009)
Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of Arabidopsis plants, Van Dongen, J.T.; Fröhlich, A.; Ramírez-Aguilar, S.J.; Schauer, N.; Fernie, A.R.; Erban, A.; Kopka, J.; Clark, J.; Langer, A.; Geigenberger, P. , Annals of Botany, Volume 103(2), p.269-280, (2009)
2008
A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment, Hoehenwarter, W.; van Dongen, J.T.; Wienkoop, S.; Steinfath, M.; Hummel, J.; Erban, A.; Sulpice, R.; Regierer, B.; Kopka, J.; Geigenberger, P.; Weckwerth, W. , Proteomics, Volume 8(20), p.4214-4225, (2008)
Downregulation of cinnamoyl-coenzyme A reductase in poplar: Multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure, Leplé, J.C.; Dauwe, R.; Morreel, K.; Storme, V.; Lapierre, C.; Pollet, B.; Naumann, A.; Kang, K.Y.; Kim, H.; Ruel, K.; Lefèbvre, A.; Joseleau, J.P.; Grima-Pettenati, J.; De Rycke, R.; Andersson-Gunnerås, S.; Erban, A.; Fehrle, I; Petit-Conil, M.; Kopk, , Plant Cell, Volume 19 (11), p.3669-3691, (2008)
Estimation of retention index thresholds for compound matching using routine gas chromatography-mass spectrometry based metabolite profiling experiments, Strehmel, N.; Hummel, J.; Erban, A.; Strassburg, K.; Kopka, J. , Journal of Chromatography B, Volume 871, p.182-190, (2008)
Integrative functional genomics of salt acclimation in the model legume Lotus japonicus, Sanchez, D.H.; Lippold, F.; Redestig, H.; Hannah, M.; Erban, A.K.U.K.J.; Udvardi, M.K. , Plant Journal, Volume 53 (6), p.973-987, (2008)
Physiologic and metabolic responses of wheat seedlings to elevated and super-elevated carbon dioxide, Levine, L.H.; Kasahara, H.; Kopka, J.; Erban, A.; Fehrle, I; Kaplan, F.; Zhao, W.; Littell, R.C.; Guy, C.; Wheeler, R.; Sager, J.; Mills, A.; Levine, H.G. , Advances in Space Research, Volume 42, p.1917–1928, (2008)
TagFinder for the quantitative analysis of gas chromatography - mass spectrometry (GC-MS) based metabolite profiling experiments, Luedemann, A.; Strassburg, K.; Erban, A.; Kopka, J. , Bioinformatics, Volume 24 (5), p.732 -737, (2008)
2007
A plastid-localized glycogen synthase kinase 3 modulates stress tolerance and carbohydrate metabolism, Kempa, S.; Rozhon, W.; Samaj, J.; Erban, A.; Baluska, F.; Becker, T.; Haselmayer, J.; Schleiff, E.; Kopka, J.; Hirt, H.; Jonak, C. , Plant Journal, Volume 49 (6), p.1076-1090, (2007)
Hybrid weakness controlled by the dosage-dependent lethal (DL) gene system in common bean (Phaseolus vulgaris) is caused by a shoot-derived inhibitory signal leading to salicylic acid-associated root death, Hannah, M.A.; Kraemer, K.M.; Geffroy, V.; Kopka, J.; Blair, M.W.; Erban, A.; Vallejos, C.E.; Heyer, A.G.; Sanders, F.E.T.; Millner, P.A.; Pilbeam, D.J. , New Phytologist, Volume 176 (3), p.537-549, (2007)
Non-supervised construction and application of mass spectral and retention time index libraries from time-of-flight GC-MS metabolite profiles. , Erban, A.; Schauer, N.; Fernie, A.R.; Kopka, J. , Metabolomics: methods and protocols, Totowa, p.19-38, (2007)
Phosphorus stress in common bean: Root transcript and metabolic responses, Hernandez, G.; Ramirez, M.; Valdes-Lopez, O.; Tesfaye, M.; Graham, M.A.; Czechowski, T.; Schlereth, A.; Wandrey, M.; Erban, A.; Cheung, F.; Wu, H.C.; Lara, M.; Town, C.D.; Kopka, J.; Udvardi, M.K.; Vance, C.P. , Plant Physiology, Volume 144 (2), p.752-767, (2007)